Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3492 122 8e-23 >seq3492 Length=1229997 Score = 122 bits (134), Expect = 8e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||||||||| ||||| || | Sbjct 1206532 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGCACTCCCAG 1206591 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || ||||||||||| |||| || ||| || || ||||| Sbjct 1206592 TCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCACTCTGAACATAGAA 1206651 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| |||| ||||| || || | |||||||||| || ||| Sbjct 1206652 CTGGCACAGGGCATGGCATGGAGGCAAAGCCATCAGAGAGATATC 1206696 Score = 122 bits (134), Expect = 8e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| || |||||||||| | || || ||||| |||| ||||| ||||| || || | Sbjct 1206696 GATATCTCTCTGATGGCTTTGCCTCCATGCCATGCCCTGTGCCAGTTCTATGTTCAGAGT 1206637 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || |||| ||||||||||| || | || ||||| ||||| | || ||||| ||| Sbjct 1206636 GGTGAATTGTCTTGCCAGCTCTACCAGAGGTCTGGAGATATGGGACTGGGAGTGCCTTTC 1206577 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || | |||||||| |||||||| || |||||| Sbjct 1206576 AACATTGCCAGCTATTCACTGCTCACATACATGATTGCCCATGTC 1206532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 1209767 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 1209826 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 1209827 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGGGATCCATTAGCATCCCAAATCTTC 1209886 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || || || |||||||| || Sbjct 1209887 ACTCCTTTGGCAGAGAGCTCTTT 1209909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || |||||||| || || |||||||| ||||| ||| | || || || || || ||| Sbjct 1209909 AAAGAGCTCTCTGCCAAAGGAGTGAAGATTTGGGATGCTAATGGATCCCGTGAGTTCCTG 1209850 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 || |||| ||| ||| | | |||||||| || ||||| || || || || |||||| Sbjct 1209849 GATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCCAG 1209790 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || || || Sbjct 1209789 TGGAGGCACTTTGGAGCAGAATA 1209767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448087275086880