Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3619 120 3e-22 seq3492 84.2 2e-11 >seq3619 Length=1584751 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || || ||||| ||||||||||| |||||||| | ||||| || ||||| || Sbjct 1064813 AGTAGTGGAGGAACTCTTTCGAGATGGGGTTAACTGGGGCAGGATTGTGGCCTTCTTCGA 1064872 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 ||| |||||||| ||||||||||| || ||||| | | || | |||| || ||||| Sbjct 1064873 GTTCGGTGGTGTGATGTGTGTGGAGAGTGTCAACCGGGAGATGTCTCCCCTTGTAGACAA 1064932 Query 3364 CATTGCCGCGTGGATGACAGA 3384 ||||||| | |||||||| || Sbjct 1064933 CATTGCCACCTGGATGACCGA 1064953 >seq3492 Length=1229997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || |||||||||||||| | || |||||||| | || ||||| Sbjct 1206524 AGGCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGC 1206583 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| | || |||||||| | |||||||| | || || | | Sbjct 1206584 ACTCCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCACTCTGA 1206643 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||| | |||| Sbjct 1206644 ACATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCAT 1206684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414318922419256