Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3492 125 6e-24 seq643 82.4 6e-11 >seq3492 Length=1229997 Score = 125 bits (138), Expect = 6e-24 Identities = 129/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || ||||| || || |||||||| ||||| || || |||||||| ||||| || ||| Sbjct 1206524 AGGCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGC 1206583 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT- 29832 || || || ||||| || || |||||||||||||||||||| || | || || | || Sbjct 1206584 ACTCCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACC-ACTCTG 1206642 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| |||| ||||||||| ||||| | ||||| ||| Sbjct 1206643 AACATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCATCAGA 1206688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 1209779 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 1209837 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | ||| || || || ||||| ||||| || || || | Sbjct 1209838 ACCCTGCTTATCCAGGAACTCACGGGATCCATTAGCATCCCAAATCTTCACTCCTTTGGC 1209897 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||| | ||||| || || Sbjct 1209898 AGAGAGCTCTTTAGCATTTGTAGAACC 1209924 >seq643 Length=2203898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | || | |||||| || || Sbjct 219348 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGGA 219407 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||| | | ||||| |||||| Sbjct 219408 ATGGAGAACCAGGTTTTTTTACCCATTATGAGTGCATTCTGTTTACCT 219455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406008489137044