Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3492 114 1e-20 >seq3492 Length=1229997 Score = 114 bits (126), Expect = 1e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || ||||| || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 1206524 AGGCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGC 1206583 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT- 27326 || || || ||||| || || ||||||||||||||||| || || | || ||| | || Sbjct 1206584 ACTCCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCA-CTCTG 1206642 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| | |||||| || Sbjct 1206643 AACATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCATCAG 1206687 Score = 104 bits (114), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| || |||||||| ||||| || || || ||||||| || Sbjct 1209757 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1209816 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 1209817 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGATCCATTAGCAT 1209875 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || || || | ||||||||||| | ||||| || || Sbjct 1209876 CCCAAATCTTCACTCCTTTGGCAGAGAGCTCTTTAGCATTTGTAGAACC 1209924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369366451705274