Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq535 86.0 9e-12 seq18147 84.2 3e-11 >seq535 Length=245707 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| || || || |||||||| || || || || || ||||||||||| || Sbjct 94322 ATCTCAGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 94263 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || |||||||| || || | | || || ||||| || |||| || ||||| || Sbjct 94262 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATGATG 94203 Query 76448 GATTTCCAGA 76457 || | ||||| Sbjct 94202 GAGTACCAGA 94193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || || || ||| | || || || || || || | Sbjct 101067 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCTGCAATGTGGATGT 101008 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || ||||||||||||||||| |||| ||||| || | ||||||| Sbjct 101007 TGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGATGGTCT 100948 Query 75564 TTTGAGGAATTTCCCA 75579 | || | || ||||| Sbjct 100947 TCTGGGAGATCTCCCA 100932 >seq18147 Length=409 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || || || ||| | || || || || || || | Sbjct 373 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCTGCAATGTGGATGT 314 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || ||||||||||||||||| |||| ||||| || | ||||||| Sbjct 313 TGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGATGGTCT 254 Query 75564 TTTGAGGAATTTCCCA 75579 | || | || ||||| Sbjct 253 TCTGGGAGATCTCCCA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712655874353280