Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3246 167 2e-36 seq31254 114 9e-21 >seq3246 Length=3797831 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||||||||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 817022 CATGCCCCCTCTCAGACGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 817081 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||||| Sbjct 817082 AGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 817141 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| || | |||||||| || || Sbjct 817142 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTC 817201 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 817202 CACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 817253 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || || ||||| || ||| |||||| ||||||||||| |||| Sbjct 816798 CCACCCCTGAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 816857 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||||||||||| || Sbjct 816858 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 816917 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 816918 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 816977 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || |||||||||||||| ||||| |||||| Sbjct 816978 TCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 817025 Score = 145 bits (160), Expect = 5e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 817250 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 817309 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||||| Sbjct 817310 AGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 817369 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | |||||||| || || Sbjct 817370 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 817429 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||| || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 817430 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 817484 >seq31254 Length=8300616 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || || || || || ||| ||||| ||||||||||| || Sbjct 739386 CATGCCACCCCTCAGGCGCAGGACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 739327 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||||| | ||| || || | Sbjct 739326 AGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGG 739267 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||| | | |||||||||| || || Sbjct 739266 GGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTC 739207 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 739206 TACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 739156 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | || ||||| || ||| |||||| ||||||||||| || | Sbjct 739610 CCACCCCTCAGGCGAAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 739551 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||| || || | || Sbjct 739550 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGG 739491 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| || ||||| ||| | | |||||||||| || || ||| Sbjct 739490 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACC 739431 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || | ||||||||| ||||| |||||| Sbjct 739430 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 739383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359853276731718