Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq699 181 2e-40 >seq699 Length=361097 Score = 181 bits (200), Expect = 2e-40 Identities = 221/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| |||| || ||| | | || Sbjct 320246 GGAAGGCAGTGAAAGGACAGCCCTTGACGTTGTGGCAGATCAGCTTCTGCAGGGAGGCAG 320187 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||| |||| | || ||||| | || || |||||||| |||||||||||| |||||| Sbjct 320186 TCTTGATGATCTCAAAGCCCACTTTGCCCCCAAAGGTGCTAGGCTTCCAGTACTCCGGGG 320127 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| |||| |||| || ||||| |||||||| || || || ||||| | ||| Sbjct 320126 AACAGATAGCGTTGCCCATCAGTCCTTTCAGGGAGAAGGGTGCGCCAAACTCCACCATGG 320067 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| || ||||| || | |||||||||| Sbjct 320066 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 320008 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 320007 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 319949 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || || ||||| || |||| ||| ||| || |||||||| |||||||| Sbjct 317863 ATGAGCCTGGTAGTTTGGAAGAGCCGCTCATCATCCCACTCAGGATGTTCCTGTTTCAGG 317804 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||||||| ||||| || || ||||||||||| | || || Sbjct 317803 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGC 317744 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| | || || ||||||| | ||| ||| || ||||| | ||||| Sbjct 317743 ACCAAGCCAAACACTTCCTGGCCGACAGAAAACTGCAAGTTCTCAGGCACATGAGGAGGG 317684 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || |||||||||||||| ||||||||| Sbjct 317683 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCACCATCAATCATC 317624 Query 9484 TG 9485 || Sbjct 317623 TG 317622 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | ||| ||||| || || | || || || || | |||| ||| Sbjct 315841 ACCTTTAACTCCCATAGGTGTTGGGCAGTCAAGTCCCACTGGTGGAAGGCTTCTTGTGTA 315782 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| ||||||||| |||||||||||||| ||| | || || |||||| | || Sbjct 315781 ATAGGAAAGATTGGAGTAAGCTTCCCAGCTTTTGTAATTATAATCACTGTTGTAAGTTGG 315722 Query 10030 AGGGCTGTCAATCA 10043 ||||||||||||| Sbjct 315721 TGGGCTGTCAATCA 315708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716596734156160