Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3246 138 1e-27 seq31254 122 8e-23 >seq3246 Length=3797831 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 817263 AGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 817322 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 817323 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 817382 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 817383 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 817442 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 817443 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 817483 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 817035 AGACGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 817094 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 817095 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 817154 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | ||||| || | ||||||||||| || Sbjct 817155 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTG 817214 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 817215 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 817253 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||| ||||| |||||||| |||||||| | || || Sbjct 816816 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCC 816875 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | ||||| || ||||||||| | Sbjct 816876 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 816935 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||||||||||| || || || || Sbjct 816936 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 816995 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| || || ||||||||| Sbjct 816996 CCTGTGAGGGTCTTCACAAAGATCTGCATG 817025 >seq31254 Length=8300616 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| ||| |||||||| ||||| ||||| || |||||||| | || || Sbjct 739364 ACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 739305 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||||||||| | ||| | || |||||||| | Sbjct 739304 AGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGG 739245 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 739244 ATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 739185 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 739184 CCTGTCAGGGTCTTCACGAAGATCTGCATTTT 739153 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| ||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 739592 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 739533 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||||||||| | ||| | || |||||||| | Sbjct 739532 AGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGG 739473 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 739472 ATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 739413 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| || || ||||||||| Sbjct 739412 CCTGTCAAGGTCTTCACAAAGATCTGCATG 739383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462123389384800