Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq132 114 2e-20 seq54308 111 2e-19 seq56282 91.5 2e-13 >seq132 Length=15727 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 4347 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 4406 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 4407 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 4466 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 4467 CAACCACTCTCTCACC 4482 >seq54308 Length=15023 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | |||||| ||||| ||||| || ||||||| || | || | Sbjct 12086 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 12145 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 12146 TCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 12205 Query 24277 C 24277 | Sbjct 12206 C 12206 >seq56282 Length=20701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 13300 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 13359 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 13360 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 13418 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 13419 CTCCAGGTAGATGGCAAAAGCCCCAGG 13445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||||| || || || |||||||| || || || || ||||||| Sbjct 9566 CATATGTCTCATACGGTCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAAAGCACCGT 9625 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || || | || || | || || || | || ||||| || | Sbjct 9626 AATAAATGGTCTCAAAAATGTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCAAAGGGGT 9685 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | || || || || ||||| | || || |||||||| || || || | ||| | Sbjct 9686 ACCGCATCAGGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGC 9745 Query 53568 TCTTATTAGAGATTTCAGC 53586 | | || ||| |||||| Sbjct 9746 GCCTGTTGGAGCGTTCAGC 9764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593106185297040