Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq18090 107 4e-18 >seq18090 Length=21919 Score = 107 bits (118), Expect = 4e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 11240 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 11181 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || |||||| || || ||||||||||| || | || || Sbjct 11180 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGGTACTTGACCAT 11122 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 11121 ATTGCAATTGGTA 11109 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 10584 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 10525 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 10524 CCCCAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 10465 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||||| | | ||||| ||| Sbjct 10464 TAACTTCTATTATCGGACATATAAG 10440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922239871896920