Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1472 181 7e-41 seq44744 102 6e-17 >seq1472 Length=1541 Score = 181 bits (200), Expect = 7e-41 Identities = 239/327 (73%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 ||| ||||| || | || ||||| |||||| | |||||||||||| | || | ||||| Sbjct 1158 GCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGTGTCCACATTGACGGAAAGTC 1099 Query 107825 CCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCAT---TATTTCCTGC-TTCCCCAATGTC 107879 ||| || | |||||| ||||| || |||||| | | || || |||||||| ||| Sbjct 1098 CCCGGAAGCCTTTCAG-GAGGCCGTACGGGCCATCGGTCGTACCCGCCTTCCCCAACGTC 1040 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || ||| || | || ||||| || |||||||||||| | |||| || ||| Sbjct 1039 TTTGGGGCTAGCCACCAGGAAAACGTGGTCTACGCCTCCTGGTCCCGGCTGCAGGCCGAC 980 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | |||||| | |||||| | |||| ||| | ||| | || || || Sbjct 979 CTCAACTGCATGCAGGACTTGTTGCAGAGCCCTATGCCCTGGCACTACGTCCTCAACACG 920 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 ||||| || || |||||||| |||||||| |||||| |||| ||||| |||||| || Sbjct 919 TGCGGCACCGATTTCCCCATCAAGACCAACAGCGAGATCGTCCGTGCCCTGAAGATGCTG 860 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAG 108086 |||| |||||| |||||||| ||| Sbjct 859 CAGGGGCGGAACAGCATGGAGTCAGAG 833 Score = 116 bits (128), Expect = 3e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 108303 GACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGC 108362 ||||| ||| | ||||||||||| | || || | |||| || | || || Sbjct 260 GACGAGCACGTTTGGGCCACCCTGAACCGCATGCCTGGCGTGCCAGGTGCCGTGCCCCAA 201 Query 108363 CACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTAC 108422 || ||||| || |||| ||||||| ||| | || | || ||||||||||||||| Sbjct 200 AACGACAAGTTCCAGCTCTCCGACATGAACGCCCTGCCCCGCCTAGTCAAGTGGCAGTAC 141 Query 108423 CACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGG 108482 | ||||| || ||||| ||| ||||| || | |||||| | || || | | | Sbjct 140 CTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGC 81 Query 108483 GCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTG 108542 || ||||||| |||||||| || ||| || |||| | |||||| | || |||||| || Sbjct 80 TCCGTCTGCATCTACGGGGCGGGCGACGTGGCCTGGCTGCTCCAGCAGCACCACCTCCTG 21 Query 108543 GCAAACAAGTTTGACCC 108559 || |||||||| ||||| Sbjct 20 GCCAACAAGTTCGACCC 4 >seq44744 Length=20694 Score = 102 bits (112), Expect = 6e-17 Identities = 251/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 108189 CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTA 108248 || ||||| | || | |||||||||||| | | || ||||| || | || ||| Sbjct 10571 CCGATGTTTTCTGGTAGTGCCTATTTTGTAGTTAGTAGAAGATTTGTAGAATACGTATTA 10630 Query 108249 GACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGA 108307 || ||| | |||| | ||| | |||| |||| |||||||| || |||||||| || Sbjct 10631 GAAAACAGCAAAATACTTAAGT-TCATTGAGTGGGCAAAAGACACTTACAGCCCCGATGA 10689 Query 108308 ACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCC 108363 |||| ||||| || ||||| | ||| || | | || || | ||| || ||| Sbjct 10690 GTACCTGTGGGCAACAATTCAGAGAA-TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGCA 10748 Query 108364 ACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACC 108423 || ||||| || | || ||||||| ||| | |||||| | ||||||||||||||| Sbjct 10749 AC---AAGTACGACGTTTCTGACATGAATGCACTGGCCAGGTTTGTCAAGTGGCAGTACT 10805 Query 108424 ACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGG 108483 || || || || || || || || || | || ||| |||| | || | Sbjct 10806 TTGAAGGTGACGTGTCCAAAGGTGCACCCTACCCGCCATGCAGTGGAGTTCACGTTCGCT 10865 Query 108484 CCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGG 108543 | |||| ||| |||| || |||||| ||||||| || | ||||| ||| |||| | Sbjct 10866 CTGTCTGTGTTTTTGGGGTAGGAGACCTGAACTGGATGCTACGAAACCACCACTTCTTTG 10925 Query 108544 CAAACAAGTTTGAC 108557 | || ||||| ||| Sbjct 10926 CTAATAAGTTCGAC 10939 Score = 82.4 bits (90), Expect = 5e-11 Identities = 226/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 10067 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 10126 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || | || | | |||||||||||||| | || || | Sbjct 10127 ATTGAGATGCTTGATAGACTTTTAAGATCAATCTATGCCCCTCAGAATTTTTATTGCATT 10186 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| ||||| ||||| |||| | || || |||| || | || || Sbjct 10187 CATGTTGATAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 10246 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 10247 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 10306 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 10307 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 10364 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 10365 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 10407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347916831170502