Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq56282 111 1e-19 seq14992 89.7 5e-13 >seq56282 Length=20701 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| || ||||| || || || || Sbjct 11892 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 11951 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || || ||||| || |||||||| || || ||||| ||||||||||| ||| Sbjct 11952 CCCAAGTTCTGTTGATTGCTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTG 12011 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 12012 CCTGTCTCTGTCTGAGACTCAATGATGGC 12040 >seq14992 Length=4940 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || || || ||||||||||| || |||||| | || || || || |||| | || Sbjct 4940 GTGAAAACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAG 4881 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||||||| | || ||||| |||||| | || || Sbjct 4880 AACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATC 4821 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 ||||||||||| ||| |||| || || || ||| || ||||| || || ||| Sbjct 4820 TTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCTTGTCCGACTACAACATCCAGAAGGAA 4761 Query 31385 TCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || |||| || | |||||||| |||| Sbjct 4760 TCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGTA 4724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445304346410160