Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq56282 91.5 1e-13 >seq56282 Length=20701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| ||||||||||| || ||| ||| | || ||||||||| || Sbjct 11916 ACTATTTCTGTACACAGGTTGCTGCATTTGAT-GGTCCCCAAGTTCTGTTGATTGCTCTT 11974 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 || ||||||| ||| ||||| | ||||||||||||||| || || | ||| || || Sbjct 11975 CCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCCTGTCTCTGTCTGAGACTCAAT 12034 Query 157225 GATG 157228 |||| Sbjct 12035 GATG 12038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506488860561360