Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq8109 149 9e-31 seq50065 122 1e-22 >seq8109 Length=28461 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||||||| || || |||| || || ||| ||| ||||||||||| ||||||| Sbjct 25182 ATGAGTCGAGTAGTTTGGAACAACTGCTCATCATCCCACTCTGGATGTTCCTGTTTCAGG 25241 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 25242 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCTGGG 25301 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| ||||||| ||||||| | ||| | ||| || | | ||||| Sbjct 25302 ACCAAACCAAACACCTCTTGCCCGACAGAAAACTGCAGGTGTTCAGGTATGTGAGGAGGG 25361 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 25362 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 25421 Query 9862 TG 9863 || Sbjct 25422 TG 25423 Score = 131 bits (144), Expect = 2e-25 Identities = 208/297 (70%), Gaps = 1/297 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| ||||| || ||| |||| || ||| | | || | |||| || Sbjct 23186 AAAGGACAGCCTTTCACATTGTGGCAGATGAGCTTCTGTAAGGAGGCGGTATTGATTATT 23245 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| ||||| | ||| || |||||||| || |||||||| | ||||||||||| | Sbjct 23246 TCAAAGCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGGAGCAGATAGCA 23305 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || || || || || ||||| || || | ||| | || | ||||| ||| Sbjct 23306 TTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTGTTTCACCAAAG 23365 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || || || |||||||| || | || || | |||| ||||| ||| || ||| Sbjct 23366 ATAGCACCTGGCCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCATAGCATCAATG 23425 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-TTTATTAAT 8985 ||||| ||||| | ||||| || || ||||| ||||||||||| ||||| || Sbjct 23426 TCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTGAT 23482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || | || || || || | |||| || Sbjct 27134 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACTGGCGGAAGGCTTCTTGTATA 27193 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| |||||||||||||| ||| || || |||||| | || Sbjct 27194 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 27253 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAG-CAAAA 10448 |||||||||||||| | ||||| ||||| ||| ||||| Sbjct 27254 TGGGCTGTCAATCAAGTGTGATCTGGCTGAAAAAGACAAAA 27294 >seq50065 Length=17739 Score = 122 bits (134), Expect = 1e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || ||||| ||||| ||||| Sbjct 15045 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 15104 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||||||| | ||||| || | |||||| || | ||||||| || |||||||| Sbjct 15105 TCCCGTTTCAGTATGTCGCAGACACGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 15164 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 15165 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 15224 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | | || |||| |||||| ||| | |||| ||||| ||||||||||| Sbjct 15225 ACGGCAGATGGGTAGACCATGTGGACCGGAGCATCAGTGACCATGGGGGGATACA 15279 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||||||||| || |||||||||||||| | |||| Sbjct 12568 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 12627 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || ||||| |||||||| || | ||| | |||| Sbjct 12628 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAGAACGGAGCTCCGATCTCCACCATGC 12687 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||| | || || | ||||| || | || || || || ||||||| Sbjct 12688 TTTCCCCAAAGATACCATTAGGTTGAGGCTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 12747 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 12748 GAGCATCAATGTCTCCATACAG 12769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707790387475120