Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq29300 95.1 3e-14 seq132 87.8 5e-12 >seq29300 Length=3227 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | ||||| ||| || |||||||||| |||||||| || Sbjct 1632 TACAAATGCCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCGCG 1573 Query 111449 TGACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || ||||| || ||| | ||||||||| Sbjct 1572 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAAGAGGGGGATTTGGGACCAGTT 1515 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 1514 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 1467 >seq132 Length=15727 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| ||||||| ||||||||||| |||||||| || | ||| ||| || ||||||| Sbjct 4469 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGGC 4410 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || || | | | ||||| || ||||| || || ||||| | |||||| |||||| Sbjct 4409 TGAAGAAGAGGGGCCTGATGCCTGGACTAACTTTCTCCAATGAACTTATTAGCAGAGATG 4350 Query 22619 AGG 22621 ||| Sbjct 4349 AGG 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301968850745786