Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq14992 109 5e-19 seq56282 82.4 7e-11 >seq14992 Length=4940 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| || || | ||| || ||||| || |||||||| ||| | Sbjct 4726 CCACCCCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4785 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||||| ||||||||||| ||| |||| | | |||||| || || || Sbjct 4786 AAGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4845 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 4846 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 4905 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| | ||| || || || || ||||| || Sbjct 4906 TCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTCAC 4940 >seq56282 Length=20701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| ||||| ||||||||||| |||| || || ||||| || |||| ||||| | | Sbjct 11928 CACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGTTGATTGCTCTTCCGATTGCAAGAG 11987 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 || ||||| |||||||||||| ||| ||||| ||| | ||| | ||| Sbjct 11988 TCTTTGTAAAGCATGTACGGTGTGCCTGTCTCTGTCTGAGACTCAATGAT 12037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471523541032320