Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14992 87.8 1e-12 >seq14992 Length=4940 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| ||||| ||||| || ||||||| Sbjct 4720 CAGTTACCACCCCTC--AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGT 4777 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | ||||||| || ||||| || | || |||| ||| || | Sbjct 4778 AGTCGGACAAGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGAT 4837 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| || ||||| || || || ||| || | | | ||||| | Sbjct 4838 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACT 4895 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGAC 16923 ||||||| |||| ||||||||| || || ||||| ||||| || Sbjct 4896 GGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTCAC 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404678608319770