Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq76866 107 1e-18 seq38029 102 5e-17 >seq76866 Length=288 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 124 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 183 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 184 GCCGGTATTTAGCCTTA 200 >seq38029 Length=5259 Score = 102 bits (112), Expect = 5e-17 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||| ||||||||||||||||| ||| ||||| || ||||| || ||||||| Sbjct 946 TAAGCCCATTCCCTTGGCTGTGGTTGAGCTGGATAGAAGGTAGGGACAGTGGGAATCTCG 1005 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| |||||| |||||||||||||||||||| Sbjct 1006 TTCATCCATTCATGTACGTCACTAATTAGATGACGA 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334608694300013