Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14992 87.8 4e-12 >seq14992 Length=4940 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | ||||| || || || | || || || ||||| Sbjct 4761 TTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAA 4820 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || ||| ||| || ||||| || |||||||| || || || || Sbjct 4821 GATCAGCCTCTGCTG---ATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 4877 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | || || | || || || || ||||| ||||| || ||||| || || Sbjct 4878 GTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTT 4937 Query 288459 GAC 288461 || Sbjct 4938 CAC 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178401075076794