Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14992 104 2e-17 seq71938 84.2 2e-11 >seq14992 Length=4940 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| | || || ||||||||||| Sbjct 4756 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCCTCCAGCTGCTTGCCA 4815 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||| ||||| ||||| ||||| || || || || || ||| Sbjct 4816 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4875 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||| |||| ||| Sbjct 4876 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTT 4935 Query 64427 TTTAC 64431 || || Sbjct 4936 TTCAC 4940 >seq71938 Length=13335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| ||||| || | | ||||| | ||||| ||||||||||| ||| ||| Sbjct 12922 CTTTTTGAATATTGTAGTCGGACAGCGTGCGTCCATCTTCTAGCTGCTTGCCAGCAAAAA 12981 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 | || ||||||||||| |||||||| ||| Sbjct 12982 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 13010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499126899428120