Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq8109 158 2e-33 seq50065 100 4e-16 >seq8109 Length=28461 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || ||||| ||||| ||||||||||| ||| |||| || || ||||| ||||| || Sbjct 25182 ATGAGTCGAGTAGTTTGGAACAACTGCTCATCATCCCACTCTGGATGTTCCTGTTTCAGG 25241 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || || || Sbjct 25242 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCTGGG 25301 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| |||| | || || | | || | Sbjct 25302 ACCAAACCAAACACCTCTTGCCCGACAGAAAACTGCAGGTGTTCAGGTATGTGAGGAGGG 25361 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 25362 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 25421 Query 9967 TG 9968 || Sbjct 25422 TG 25423 Score = 131 bits (144), Expect = 2e-25 Identities = 200/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || ||||||||| || ||||| ||| | || ||||| || | || Sbjct 23186 AAAGGACAGCCTTTCACATTGTGGCAGATGAGCTTCTGTAAGGAGGCGGTATTGATTATT 23245 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || || || || | || || |||||||| || ||||||||| | ||||||||||| | Sbjct 23246 TCAAAGCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGGAGCAGATAGCA 23305 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || || |||| || ||||| || || | ||| | || | ||||| ||| Sbjct 23306 TTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTGTTTCACCAAAG 23365 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||||| || || || ||||| || | || ||| | || || || | ||| || | | Sbjct 23366 ATAGCACCTGGCCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCATAGCATCAATG 23425 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || |||||| || || || || || || || ||| Sbjct 23426 TCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 23470 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| || | ||| Sbjct 23986 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGGATCTGGAAAGTG 24045 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 24046 TCGGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 24105 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 24106 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 24163 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 24164 CACTCAAGTGTTGCACATA 24182 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || || |||||| | || || || || |||| ||||| Sbjct 27134 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACTGGCGGAAGGCTTCTTGTATA 27193 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| |||||| || Sbjct 27194 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 27253 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||||| | || |||||| Sbjct 27254 TGGGCTGTCAATCAAGTGTGATCTGGCT 27281 >seq50065 Length=17739 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 |||||||| || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 12594 CCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 12653 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||| |||||||| || | ||| | ||||| || || ||||| || || | Sbjct 12654 TTCAGGGAGAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAGATACCATTAGGTTGA 12713 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 12714 GGCTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 12773 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 12774 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 12806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722977828788200