Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14992 143 3e-29 >seq14992 Length=4940 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || ||||| || || ||||| ||||||||| | || || ||| ||| |||| | | | Sbjct 4940 GTGAAAACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAG 4881 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| || || |||||| |||| || ||| |||| || Sbjct 4880 AACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGAT 4822 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| |||||||| || | ||||||| | ||||||||||||||| ||||| Sbjct 4821 CTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCTTGTCCGACTACAACATCCAGAAGGA 4762 Query 38435 AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || ||||| ||||||||||| |||| || || Sbjct 4761 ATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGG 4726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499654352136320