Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq17879 118 4e-21 seq60848 100 1e-15 seq21534 93.3 2e-13 >seq17879 Length=41821 Score = 118 bits (130), Expect = 4e-21 Identities = 193/276 (70%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| || || || |||||||||||| |||| | ||| |||||||| ||||| Sbjct 41592 GCTGTGATTACAGTACCTGCCTATTTCAATGATTCACAGAGACAATCAACTAAAAATGCA 41533 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| | ||||| || ||| | ||| || | || | ||||| ||||| || ||| |||| Sbjct 41532 GGAAAGATTGCCGGATTAGAGGTTGTTAGGATAGTAAATGAGCCTACCGCGGCTTCTCTT 41473 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGA-AGaaaaaaaTATTTTAGTATTTGATTT 451500 ||||||||| ||| || ||||| ||| || | || ||| | |||| |||| | Sbjct 41472 GCATATGGATTAG----ATAAAAAG---GAGATTGAGCAGAAGATTCTGGTATATGATCT 41420 Query 451501 TGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 ||| ||||| ||| ||| ||| || ||| | | |||||| ||| | || Sbjct 41419 TGGAGGAGGTACTTTCGATGTTTCAGTGCTTGAAGTGTCAGATGGAACTTTTCAGGTGTT 41360 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| ||| ||||||| | || |||| || || || Sbjct 41359 GGCTACCTCAGGTGATAATAATTTAGGTGGGGATGA 41324 >seq60848 Length=27135 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || || Sbjct 1155 GTTACTAATGCGGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 1214 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| ||||| || ||||| Sbjct 1215 AAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACAGCT 1274 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 1275 GCTGCGATAGCCTATGGCCT 1294 >seq21534 Length=5954 Score = 93.3 bits (102), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 5767 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 5708 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||||||||| Sbjct 5707 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACAGCAGA 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973619296133684