Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq60848 107 1e-17 seq17879 93.3 3e-13 seq58862 87.8 1e-11 >seq60848 Length=27135 Score = 107 bits (118), Expect = 1e-17 Identities = 359/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || || ||||||||||||||||| | | | || || | ||| || ||||| Sbjct 1960 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1901 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 1900 AAATCCTGCAGCAGTT-TCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 1842 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || || || | |||| | | ||||| ||||| || || Sbjct 1841 GTCATGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCCACGGGATCCAG 1782 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | |||| ||| | | || ||||| || |||||| ||| | ||| | Sbjct 1781 GGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTA--ATGGACGTG 1724 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| ||| || | | || || ||| || Sbjct 1723 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGACGAC 1664 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 517962 || | ||| || ||||| || ||||| || | || | || | | ||| | || | Sbjct 1663 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGACGACGAACTGCTCTCTTGTTCTCA 1604 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 |||| ||| | || | || | |||||| || ||| | | || | || Sbjct 1603 CTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCG 1548 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| ||||| || ||||| | ||| | |||| || | | |||| | || | Sbjct 1547 GTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTTACCTCAAAGAT 1488 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||||||| | || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1487 GCCATCTTCAATCGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1428 Query 518143 TACATTCATTTC 518154 || ||| |||| Sbjct 1427 AACGTTCCTTTC 1416 >seq17879 Length=41821 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 |||| || |||||||||| || || || || ||||| | ||| ||| ||| ||||| | Sbjct 41460 CTAATCCATATGCAAGAGAAGCCGCGGTAGGCTCATTTACTATCCTAACAACCTCTAATC 41519 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | ||||| || | | || ||||| ||||||||||| ||||| ||||| || |||| Sbjct 41520 CGGCAATCTTTCCTGCATTTTTAGTTGATTGTCTCTGTGAATCATTGAAATAGGCAGGTA 41579 Query 322359 CAGTAATAACTGCTTTATTAATAG 322382 | ||||| || ||||| | || || Sbjct 41580 CTGTAATCACAGCTTTTTGAACAG 41603 >seq58862 Length=22117 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 8262 TGTTGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGCATGGTTAT 8321 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 8322 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 8381 Query 367113 TGATGG 367118 ||||| Sbjct 8382 CGATGG 8387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776707487591638