Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4343 237 2e-57 seq60848 205 1e-47 >seq4343 Length=2668 Score = 237 bits (262), Expect = 2e-57 Identities = 615/923 (67%), Gaps = 36/923 (4%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || ||||| |||||||| || ||||| |||| ||| ||||| | || Sbjct 1654 AGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCAATGCCCTCGTAGAGGGAG 1713 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTCGCTTTGCGCGCTCACAC 7360 || || |||||| | | ||||| | ||||| | || || || || | |||||| Sbjct 1714 TCGATCTCAATGCTAGCTTGTG---TGGAAGAGCTGAGAGTGCGTTTCGCCCTCTCACAA 1770 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 ||||| || | || | | || ||| ||| || | ||| || ||| || ||||| Sbjct 1771 GCCGTACGCAGTCGCCTCACCGCTCGCTTGTTGCCAGCAATGTCACGCTTGTGCTTACGC 1830 Query 7421 TTAAACTCTTC-AGAGAAGTGTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || || ||||| | | || || | | | | | || || || || ||||||| | Sbjct 1831 TTGAATTCTTCCACAAAATGGTTCACCATGCGGTTG---TCAAAGTCCTCCCCACCCAGG 1887 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || | || || |||||||| || | |||||| | | | || Sbjct 1888 TGGGTGTCACCAGCTGTAGACTTCACCTCAAAGATGCCATCCTCAATGGTAAGGATAGAC 1947 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--- 7594 ||||| || || || || ||||||||||| ||||| |||||| | || | | | Sbjct 1948 ACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCTCTCCAGCCCGGGTA 2007 Query 7595 ---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAG 7650 |||||||| | || || || ||||| || ||||| || || || |||||||| | Sbjct 2008 CCTTTCTTATCCAACCCATAGGCTATAGCAGCTGCCGTGGGCTCGTTGATAATACGCATC 2067 Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 ||| || ||||||| || || | |||||||| || || || || || || || || || Sbjct 2068 ACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCGCTGGGAGTCATTGAA 2126 Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGAT 7770 ||| || || || || | ||| || | | ||||| || ||||| | || || || Sbjct 2127 GTAAGCAGGCACTGTGATGACAGCATTCTGCACTTTGCGCCCCAGATAGGCCTCAGCAAT 2186 Query 7771 ATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTT 7829 || ||||| |||||||| ||||| || ||||| || | | | | || ||| | | Sbjct 2187 CTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG-GGAAGAAGGTCTTCATCT 2245 Query 7830 CACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA---T 7886 |||| || | || |||| | | |||| || || ||| | | ||| | Sbjct 2246 CACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CACTCTCGTTCACCACACGGA 2299 Query 7887 ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGAC 7946 | | ||| | ||||| ||| || ||| |||| |||| | ||||| |||| Sbjct 2300 AAGGCCAGTGCTTCATGTCGGACTGCACCGTGGGGTCATCGTACTTGCGGCCGATGAGAC 2359 Query 7947 GCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCC 8006 |||| |||||||| | ||||| | |||||||| || |||||||| || ||||| | Sbjct 2360 GCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCTTGGCAGCGTCAC 2419 Query 8007 CGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCT 8065 |||| || || || || || || || || || || | |||| || || || || || Sbjct 2420 CGATGAGGCGCTCTGTA---TCGGTGAAGGCCACATA-GCTGGGCGTGGTGCGGTTGCCC 2475 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 |||||||| || || || || || | | | || ||||||| ||||| || ||||| Sbjct 2476 TGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACGCCCACGCAGGAGTACGTG 2535 Query 8126 GTTCCTAAATCAATACCGATTGC 8148 || || || ||||| ||||| || Sbjct 2536 GTGCCCAAGTCAATGCCGATCGC 2558 >seq60848 Length=27135 Score = 205 bits (226), Expect = 1e-47 Identities = 373/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||| ||||| ||||| || Sbjct 1960 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1901 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || ||||| |||| ||||| Sbjct 1900 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 1841 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| ||| | || || || | ||||| || || |||| Sbjct 1840 TCATGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCCACGGGATCCAGG 1781 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | ||||||||| || ||| Sbjct 1780 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 1721 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||||||||| || | | || | | || || | Sbjct 1720 AAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGACGACAGA 1661 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | |||||||| || | | ||| | Sbjct 1660 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGACGACGAACTGCTCTCTTGTTCTCACTG 1601 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || || ||||| || || | | | | Sbjct 1600 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTT---G 1544 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1543 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTTACCTCAAAGATGCCA 1484 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || ||| Sbjct 1483 TCTTCAATCGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 1424 Query 7577 TTC 7579 ||| Sbjct 1423 TTC 1421 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || || || || || || || || || ||||| ||||| ||||| || || | Sbjct 1303 TTTTTGTCCAGGCCATAGGCTATCGCAGCAGCTGTTGGCTCATTGATAATTCGCAGTACG 1244 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| ||| | ||||||||||| || || || || || || || || ||| Sbjct 1243 TTGAGCCCTGCAATGGTTCCAGCATCTTTCGTAGCCTGACGCTGAGAGTCATTGAAATAG 1184 Query 7715 GCCGGGACCGTTACGACCGC 7734 || || || || || ||||| Sbjct 1183 GCTGGTACAGTCACTACCGC 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634474461035320