Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq56282 86.0 7e-12 seq132 86.0 7e-12 >seq56282 Length=20701 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||| | ||||||||||||| |||| | || || ||||| Sbjct 11894 CTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 11953 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 ||| |||| ||| || ||||| ||||| | || ||||| |||||||| || || || Sbjct 11954 CAAGTTCTGTTGATTGCTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCC 12013 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 12014 TGTCTCTGTCTGAGACT 12030 >seq132 Length=15727 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | |||||||||||| ||||| ||| || ||||| || |||| ||||| Sbjct 4347 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 4406 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 4407 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 4465 Query 117412 GCAA 117415 |||| Sbjct 4466 GCAA 4469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589369262776520