Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14992 131 4e-25 seq71938 89.7 1e-12 >seq14992 Length=4940 Score = 131 bits (144), Expect = 4e-25 Identities = 149/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||||| || || || || ||||| |||| |||| || | |||||| || |||| Sbjct 4749 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGCCCATCCTCCAGCT 4807 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| || | || || || || ||||||||||| ||||| || || | Sbjct 4808 GCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 4867 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||||||||||||||||||||| ||| ||||| || ||||| | ||||| | Sbjct 4868 TGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGC 4924 Query 195113 CTGTCAAAGTTTTTAC 195128 |||||| ||||| || Sbjct 4925 CTGTCAGGGTTTTCAC 4940 >seq71938 Length=13335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| |||| || || | |||||||| |||||||| || || || | Sbjct 12922 CTTTTTGAATATTGTAGTCGGACAGCGTGCGTCCATCTTCTAGCTGCTTGCCAGCAAAAA 12981 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| |||||||||||| Sbjct 12982 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 13010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108302830233941