Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq60848 125 6e-23 seq17879 87.8 1e-11 >seq60848 Length=27135 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1155 GTTACTAATGCGGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 1214 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 1215 AAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACAGCT 1274 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1275 GCTGCGATAGCCTATGGCCTGGACAAA 1301 >seq17879 Length=41821 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || ||||| || ||||| ||||| ||||| | ||| | |||||| |||| Sbjct 41592 GCTGTGATTACAGTACCTGCCTATTTCAATGATTCACAGAGACAATCAACTAAAAATGCA 41533 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| ||||| ||| | | ||| || | || | ||||| ||||| || ||| | ||| Sbjct 41532 GGAAAGATTGCCGGATTAGAGGTTGTTAGGATAGTAAATGAGCCTACCGCGGCTTCTCTT 41473 Query 550520 GCATATGGACTTGATAAA 550537 ||||||||| | |||||| Sbjct 41472 GCATATGGATTAGATAAA 41455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024910657777270