Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq29300 120 2e-22 seq29096 118 9e-22 seq39813 96.9 3e-15 >seq29300 Length=3227 Score = 120 bits (132), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1470 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1529 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||||||| || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 1530 CCCCTCTTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCAT 1588 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||||||||||| ||||| || || || || || | Sbjct 1589 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 1646 Query 30329 ACAG 30332 |||| Sbjct 1647 ACAG 1650 >seq29096 Length=6299 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 1978 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 1919 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 ||| ||||| ||||| || || |||||||| ||||| || || || || || || | Sbjct 1918 TACTCCGAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGATAGTTCACCATTTAG 1859 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||||||||| | |||||| || Sbjct 1858 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 1814 >seq39813 Length=6178 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 4545 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGGCGATTCTTCTCAGGA 4604 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| | | ||||| || ||| Sbjct 4605 ATGGAGAACCAGGTTTTTTTACCCATTATCAGCGCATTCTGTTTACCT 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408204641221079