Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq56282 93.3 8e-14 >seq56282 Length=20701 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| | || |||||||| ||||||||||| ||||||||| Sbjct 11892 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 11951 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 |||| || | ||||| ||| |||||| || ||| ||||| ||||| | || | Sbjct 11952 CCCAAGTTCTGTTGATTGCTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTG 12011 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 12012 CCTGTCTCTGTCTGAG 12027 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || || ||||| || || || || || Sbjct 13287 CTGGTTGGTTTCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 13346 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| ||||||||||| || |||| ||| | | || | ||||||||| ||||| Sbjct 13347 TCTGGCTCGCTGCTCCTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 13406 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||||||| |||| ||| | ||| || |||| || Sbjct 13407 CAAATGCCATGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 13450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927882017533120