Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq60848 95.1 8e-14 >seq60848 Length=27135 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 2862 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2921 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 2922 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2953 Score = 89.7 bits (98), Expect = 3e-12 Identities = 225/337 (67%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||| || || ||||| ||||| |||| || ||| || || | | | Sbjct 1626 CGTCTCCGCACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCTAGCACGCAGGCCAGT 1685 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 | ||| |||||||||| | ||| || ||||| | | || ||||| || ||| Sbjct 1686 ATCGAAATTGATTCTCTCTATGAGGGTATTGACTTCTACACGTCCATTACCAGAGCTCGC 1745 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | |||| || || | || | || ||||| ||| | | || Sbjct 1746 TTTGAAGAGCTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCCGTGGAAAAGGCCCTG 1805 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | || || |||||||| || ||||||| || || || || || || || || Sbjct 1806 CGGGATGCCAAGCTCGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACT 1865 Query 475727 AGAATTCCAAAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATG 475784 | || ||||| || ||||| |||| || || | || || || ||| || | || Sbjct 1866 CGTATCCCAAAGATCC-AGAAACTGCTG-CAGGATTTCTTCAACGGCAAAGAGCTGAACA 1923 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||||||||||||||| || || || || Sbjct 1924 AGAGCATCAATCCTGATGAAGCTGTGGCTTACGGTGC 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264622230187604