Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq44744 266 4e-66 seq1472 104 3e-17 >seq44744 Length=20694 Score = 266 bits (294), Expect = 4e-66 Identities = 653/987 (66%), Gaps = 5/987 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 ||||||| ||| || |||| ||||| || || || |||||| || |||||| ||| Sbjct 10989 TGTCGCAAATGCTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCGAACTTA 10930 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| ||| |||| ||||||| || |||||| ||| || || Sbjct 10929 TTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAACA 10873 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 ||||| || || | ||| || || |||| |||||||| | || ||||| | ||||||| Sbjct 10872 CAGACAGAGCGAACGTGAACTCCACTGCATGGCGGGTAGGGTGCACCTTTGGACACGTCA 10813 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| ||||||||||| | || | |||||| || |||||| Sbjct 10812 CCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCGTAC 10753 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| | | ||| ||||| || || | || || | ||| | || ||||||||| Sbjct 10752 TTGTTGCTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACAGG 10693 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || ||||||||||| ||||| || | ||| || ||||||| ||| |||| Sbjct 10692 TACTCATCGGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTGTTT 10633 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 | |||| || | ||| | || ||||| || || || || || || ||| Sbjct 10632 TCTAATACGTATTCTACAAATCTTCTACTAACTACAAAATAGGCACTACCAGAAAACATC 10573 Query 160467 GGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 || | | ||| || | |||||| || ||||| | || | | Sbjct 10572 GGAGTACTGAGAGGTGGTAGTTGTTTGTCTACGCCTGTGTTCTTTATTTTACCATCAATA 10513 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | | || |||| |||||||| || || | ||||| ||| || || | Sbjct 10512 ATTTCATGGTGCTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCCAAG 10453 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 ||||| |||| | || | ||| | | || | || ||| |||| ||||| | ||| Sbjct 10452 CTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTATTATTTCTTGGTTGGTCTTTATAGGA 10393 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 ||||| | || || | |||||| | ||| ||||| || | || || || || Sbjct 10392 AAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCT 10333 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 ||||||| ||||| ||||||||||| | |||||| ||||| || || || |||||| Sbjct 10332 TTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCTAAC 10273 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAAC 160826 | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || || Sbjct 10272 TGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAAAAA 10214 Query 160827 ATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 | || | | |||| || || || | |||||| | |||||||| || ||||| | Sbjct 10213 AGATTCTGGAGACTTTTTATCAACATGAATGCAATAAAAATTCTGAGGGGCATAGATTGA 10154 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 || | | || || | |||||| || || |||| | ||| || ||||| || || || Sbjct 10153 TCTTAAAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGG 10094 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 ||| || | || || || || | | || | ||| || | |||||| | || || Sbjct 10093 AAATTCTGCTTCTTCATTGCTGAGAGGTTCCGTGATGTATTTCCTAGTCTTGGTGAAGTA 10034 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 |||| || |||||||| ||||| Sbjct 10033 GGCACAGTCTGCTGTCATGTTAATATA 10007 >seq1472 Length=1541 Score = 104 bits (114), Expect = 3e-17 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || | || ||||| | ||| || | |||| |||||| || | Sbjct 6 GTCGAACTTGTTGGCCAGGAGGTGGTGC---TGCTGGAGCAGCCAGGCCACGTCGCCCGC 62 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | ||||||||| || |||| |||| |||| |||||||| | || || || Sbjct 63 CCCGTAGATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTT 122 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||| || || |||||||||||| || | | || | || | ||||||||| Sbjct 123 GCTGGTGTCGCCCTCCAGGTACTGCCACTTGACTAGGCGGGGCAGGGCGTTCATGTCGGA 182 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | | | |||| | |||| |||||||| || ||||| ||||| || | ||||| Sbjct 183 GAGCTGGAACTTGTCGTTTTGGGGCACGGCACCTGGCACGCCAGGCATGCGGTTCAGGGT 242 Query 160337 GGCCCACAGGTGTTCGTC 160354 |||||| | ||| ||||| Sbjct 243 GGCCCAAACGTGCTCGTC 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576620890653480