Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4343 194 2e-44 seq60848 176 6e-39 seq14992 150 2e-31 seq65150 98.7 1e-15 seq21534 91.5 2e-13 seq71938 86.0 8e-12 >seq4343 Length=2668 Score = 194 bits (214), Expect = 2e-44 Identities = 519/788 (66%), Gaps = 8/788 (1%) Strand=Plus/Minus Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 || || ||||| | || ||||| |||||| ||| | | ||| | | ||||||| Sbjct 1575 ACGGCTTGTGAGAGGGCGAAACGCACTCTCAGCTCTTCCACACAAGCTAGCATTGAGATC 1516 Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 || || | | || || ||||||||||| || | ||||| ||||| || || || ||| Sbjct 1515 GACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCTTCGAGGAG 1456 Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCA 196258 | || | ||| | || | | |||| || || || ||| || || || || Sbjct 1455 CTCAATGCCGATCTCTTCCGTGGCACTCTGGAGCCAGTGGAGAAAGCTCTGCGCGATGCC 1396 Query 196259 AAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCG 196318 ||| | || ||| || | | || || || || ||||| || || |||||||| || Sbjct 1395 AAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTACCCGTATCCCC 1336 Query 196319 AAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAAC 196378 ||||| ||| || |||| |||||||||| ||||| | ||||| | |||||| Sbjct 1335 AAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAGCATCAAC 1276 Query 196379 CCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGAC 196438 || |||||||| |||||||| || || ||||| || || ||||| |||| | | ||| Sbjct 1275 CCTGATGAAGCTGTTGCTTACGGCGCTGCCGTGCAAGCAGCTAT--CCTCATG-GGAGAC 1219 Query 196439 AA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 || | ||||| || ||||| ||||| | ||||| | || | |||||||| | Sbjct 1218 AAGTCGGAGAACGTGCAGGATCTGCTGCTCTTGGATGTCACCCCTCTGTCCCTGGGCATC 1159 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 || ||||| ||||| || ||||| | || | | ||||| || ||||| || || Sbjct 1158 GAGACAGCCGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCATTCCCACCAAA 1099 Query 196556 AAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATTCAAGTATA 196614 | || ||| | || || || || || || | || |||| | | || || || Sbjct 1098 CAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGTCCTGGTCCAGGTGTA 1040 Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674 ||| || || | || | ||||| ||| | | || || | || || || || || Sbjct 1039 TGAGGGCGAGAGGGCCATGACGAAGGACAACAACTTGCTGGGCAAGTTTGACTTAACAGG 980 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 || || | |||||| | || || || ||||| | || || || || || || || Sbjct 979 CATCCCCCCAGCACCCCGCGGAGTCCCCCAGATCGAGGTCACTTTTGACATCGATGCCAA 920 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794 || || || ||||||| || | ||||||| | || || | ||||| || Sbjct 919 CGGTATCCTGAACGTCAGTGCCGTGGACAAGAGCACGGGTAAGGAGAACAAGATCACCAT 860 Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854 |||||||||||||| || ||| ||||| || ||||| || ||||| ||||| || || Sbjct 859 CACCAATGACAAGGGTCGCCTTAGCAAGGATGACATTGACCGCATGGTGCAAGAAGCAGA 800 Query 196855 AAAGTACA 196862 || |||| Sbjct 799 GAAATACA 792 Score = 183 bits (202), Expect = 4e-41 Identities = 590/909 (65%), Gaps = 15/909 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || || || || || || || ||||| || || || || | || ||| Sbjct 2558 GCGATCGGCATTGACTTGGGCACCACGTACTCCTGCGTGGGCGTCTTCCAGCATGGCAAA 2499 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 2498 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 2439 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || || || || || || ||| ||||||||||||| ||| Sbjct 2438 GATACAGAGCGCCTCATCGGTGACGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2379 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| || | || || | Sbjct 2378 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTACGATGACCCCACGGTGCAGTCC 2319 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| ||| || || || | ||||| ||||| | | | | Sbjct 2318 GACATGAAGCACTGGCCTTTCCGTGTGGTGAACGAGAGTGGC----AAGCCCAAGGTGCA 2263 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| ||| | || |||| || || || || ||||| Sbjct 2262 AGTGGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 2204 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| ||| || | | |||| | ||| | |||| || Sbjct 2203 TTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCA 2144 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||||||||||| ||| || || || ||||| || || || |||| | | Sbjct 2143 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 2084 Query 195777 TTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | |||||||| || || || || ||||| || || ||| Sbjct 2083 TCACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCTATAGCCTAT 2025 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || |||| ||||| | || | ||| || || || | |||||||| || || Sbjct 2024 GGGTTGGATAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGA 1965 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || ||||| || | || | ||||| | ||| || || || || ||| || Sbjct 1964 GGGGGCACTTTCGATGTGTCTATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCT 1905 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTG 196009 || |||||||| || || || ||||| || || || || || | | ||||| Sbjct 1904 ACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTT 1845 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || || ||| || ||| | ||| || ||| |||| || | || | | Sbjct 1844 GTGGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGG 1785 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || ||||| | || ||||| |||||| ||| | | ||| | | Sbjct 1784 CGACTGCGTACGGCTTGTGAGAGGGCGAAACGCACTCTCAGCTCTTCCACACAAGCTAGC 1725 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 ||||||| || || | | || || ||||||||||| || | ||||| ||||| || Sbjct 1724 ATTGAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGC 1665 Query 196190 TTTGAAGAG 196198 || || ||| Sbjct 1664 TTCGAGGAG 1656 >seq60848 Length=27135 Score = 176 bits (194), Expect = 6e-39 Identities = 357/530 (67%), Gaps = 0/530 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 |||||||| || || ||||| || |||||||| ||| |||| | ||||||| ||| || Sbjct 1431 ATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACGATTGAAGATGGCATC 1490 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || ||||| | ||||| ||||| ||||| | ||||| ||||| || || || Sbjct 1491 TTTGAGGTAAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACAACCGC 1550 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || || ||| ||| || ||| | |||||||| || || || Sbjct 1551 ATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAAGACATCAGTGAGAAC 1610 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 || || ||||||| || | |||||||| || ||||| || || ||||| || ||| Sbjct 1611 AAGAGAGCAGTTCGTCGTCTCCGCACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCT 1670 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || | | | || |||||||| | | ||| || ||||||||||| || | Sbjct 1671 AGCACGCAGGCCAGTATCGAAATTGATTCTCTCTATGAGGGTATTGACTTCTACACGTCC 1730 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 |||||| | || || ||||||||| | || |||| |||| | |||| || Sbjct 1731 ATTACCAGAGCTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCC 1790 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || ||| | | || || || || ||| | || || || || | |||| || || || Sbjct 1791 GTGGAAAAGGCCCTGCGGGATGCCAAGCTCGACAAATCGCAGATCCATGACATCGTGCTG 1850 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAAT 196354 || || || || || ||||| || ||||| || | |||| |||||||| Sbjct 1851 GTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTGCAGGATTTCTTCAACGGC 1910 Query 196355 AAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| | ||||| | ||||| || |||||||| || ||||| ||||| Sbjct 1911 AAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTACGGTGC 1960 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| || || || | Sbjct 1162 ATGCGGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACGAAAGATG 1221 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | ||||| || || ||| || ||||||||||||| |||||||| ||||| | Sbjct 1222 CTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACAGCTGCTGCGA 1281 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 | || ||||| |||||||| || Sbjct 1282 TAGCCTATGGCCTGGACAAAAA 1303 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||| |||||||| || | | || | ||||| ||| | | || || | || || | Sbjct 2799 GTATACGAAGGAGAGCG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2857 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 |||||| ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 2858 GACGGGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 2917 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 2918 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 2977 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || ||||||||||| Sbjct 2978 CACGATAACAAATGACAAGGG 2998 >seq14992 Length=4940 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 ||||||||||| || || || || |||||||| ||||| ||| | ||||| || || Sbjct 4940 GTGAAAACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAG 4881 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| |||||||| || || |||||||||||||| ||||||||||| | || || Sbjct 4880 AACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATC 4821 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || ||||| || ||||| || ||||| || ||| | | || |||||| | || ||||| Sbjct 4820 TTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCTTGTCCGACTACAACATCCAGAAGGAA 4761 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || ||| | || || | || |||||||| Sbjct 4760 TCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGT 4725 >seq65150 Length=182698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/368 (66%), Gaps = 18/368 (5%) Strand=Plus/Minus Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || |||||||| ||||| ||||| ||| ||| | | || ||||| | ||| || || Sbjct 176621 CCTGGTACTGGAAAAACACTTCTGGCTAAAGCTGTATCTGGAGAATCTAATGTACCATTC 176562 Query 198639 CTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTC 198698 | || || | || ||||| || ||||| || || || || |||||| | || Sbjct 176561 TTGGAGGCTTCTGGAGCTAGTTTTGATGATATGTTTGTAGGAGTAGGGGCTAAGAGGGTG 176502 Query 198699 CGGGAACTCTTTGAGCAAGCACGTGAAAATCAA---CCATGTATCATCTTCATTGATGAG 198755 || ||||| |||||| |||| | |||| | | || ||||| || || ||||| ||| Sbjct 176501 CGAGAACTATTTGAGAAAGC---TAAAAAGCTATCCCCTTGTATTATTTTTATTGACGAG 176445 Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG--AACT-ACTACACCTGGTAATGATGAGCGT 198812 || || || ||| | |||| | || || || | | || | || |||||| Sbjct 176444 ATAGATGCACTTGCTGGGAAGAGAGGGGGTAAATTCAATATTCAGGGAAATGAT------ 176391 Query 198813 GAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGACAATGAGACTGGTATC 198872 || || ||||| || | || | ||||||||||||||| | | | || |||| || Sbjct 176390 ---CAAACTATTAATCAATTGCTGAGCGAGATGGATGGTTTTAATACTCAGTCTGGAATT 176334 Query 198873 GTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGT 198932 | || |||||||| || ||||| | || | | ||||| ||| | | || || || Sbjct 176333 ATTGTAATTGCTGCAACCAATAGATTGGAGAGTATTGATGAAGCAGTATTGCGACCAGGA 176274 Query 198933 CGATTCGA 198940 ||||| || Sbjct 176273 CGATTTGA 176266 >seq21534 Length=5954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 ||||| |||||||| || |||||||| ||| | || ||||| || |||| || | ||| Sbjct 3598 AAGGACAACCATCTTCTGGGAACTTTTGATCTCACTGGGATCCCTCCTGCCCCTCGCGGT 3539 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || ||||| | ||| ||| || ||||| | ||||| || || ||||||||| Sbjct 3538 GTCCCCCAGATCGAAGTTACCTTTGAAATAGATGTGAATGGGATCCTCCGTGTCACAGCT 3479 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| | || || | ||||| |||||| || || || ||||| Sbjct 3478 GAAGACAAGGGCACCGGGAACAAAAACAAGATCACGATTACAAACGATCAGAATCGGCTG 3419 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | ||||| || || | ||||| | ||||| || |||| ||| |||||| || Sbjct 3418 ACACCAGAGGAGATCGAGAGGATGGTCAACGATGCCGAGAAGTTTGCGGAGGAAGACAAG 3359 >seq71938 Length=13335 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| ||||| ||||||||||| || ||||| ||||||||||| Sbjct 13010 AGGCATTCCTCCTGACCAGCAGCGACTGATTTTTGCTGGCAAGCAGCTAGAAGATGGACG 12951 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || | || ||||| ||||||| Sbjct 12950 CACGCTGTCCGACTACAATATTCAAAA 12924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657180500952560