Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq65150 100 8e-16 >seq65150 Length=182698 Score = 100 bits (110), Expect = 8e-16 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||| || |||||||| ||||| | ||| || || | | | || | |||||| | Sbjct 176437 GCATCTATCTCGTCAATAAAAATAATACAAGGGGATAGCTTTTTAGCTTTCTCAAATAGT 176496 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 |||| || | || || | || ||| |||| || |||| || | || | Sbjct 176497 TCTCGCACCCTCTTAGCCCCTACTCCTACAAACATATCATCAAAACTAGCTCCAGAAGCC 176556 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 | | ||||| |||||| | ||| || | ||| || | ||||||||||| || || || Sbjct 176557 TCCAAGAATGGTACATTAGATTCTCCAGATACAGCTTTAGCCAGAAGTGTTTTTCCAGTA 176616 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTC 289275 ||||| || || | ||||| | |||||| |||| | |||| || ||| |||||| Sbjct 176617 CCAGGAGGGCCATATAATATTATTCCCTTAGGTATTCTTGCACCCATAGATGCATATTTT 176676 Query 289276 TCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCT 289335 | || || || | ||| || || || ||||| | ||| | |||| |||| | | ||| Sbjct 176677 TTCGGTCTTTTCAGAAAATCAACTATCTCCTCTAATTCTTCTTTTTCCTCCTTAATTCCA 176736 Query 289336 GCTACATC 289343 |||||||| Sbjct 176737 GCTACATC 176744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470253866011051