Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq54549 134 2e-25 seq66465 123 3e-22 seq67507 105 8e-17 seq64843 104 3e-16 seq35656 89.7 6e-12 >seq54549 Length=25704 Score = 134 bits (148), Expect = 2e-25 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | || ||||||||| ||||| ||||| || | | || Sbjct 14557 GCTTGGCCAGCTCTCCTGGGAGCAGCAAGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 14498 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 14497 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 14438 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 14437 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 14378 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 14377 GGACCTGCTTCAGCACCTTGTAGA 14354 >seq66465 Length=982 Score = 123 bits (136), Expect = 3e-22 Identities = 147/202 (73%), Gaps = 22/202 (11%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 401 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 460 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | | | ||||||||| || |||||| |||||| |||| | Sbjct 461 TGGGGGCGCGCTTGTT-------GC------GCCGGC---------GATGCGCTCGAAGA 498 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 499 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 558 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 559 GCACCTGCTTCAGCACCTTGTA 580 >seq67507 Length=5290 Score = 105 bits (116), Expect = 8e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 ||||||| | ||||||| |||| ||||||||||| || |||||||||| ||| | Sbjct 950 GGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGC 1009 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||| |||||| ||| |||||||||||||||||| ||||||||||| Sbjct 1010 CTTGGAGGAGATACCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 1057 >seq64843 Length=3276 Score = 104 bits (114), Expect = 3e-16 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| || |||||||||| ||| | |||| ||||| Sbjct 756 CGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGA 815 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||| |||||||||||||||||| ||||||||||| Sbjct 816 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 852 >seq35656 Length=1118 Score = 89.7 bits (98), Expect = 6e-12 Identities = 155/221 (70%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCT--CGCGCGTGCC 1254400 || |||||| ||||| ||| | ||| | |||||| |||||||| | | | | | Sbjct 297 GCTTGGCCACCTCGCCAGGCAGTAGCAGCCACACGGCCGTCTGGATGTGTCCCACTAGGT 356 Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC--GGCCTCGGTGCCGATGCGGTCG 1254458 ||| ||||| |||| |||||||| | || | | ||||| || ||||||| || Sbjct 357 GATGGTGTTAG--TTGT---AGTGCGCCGG--GGACAAGACCTCGCTGGCGATGCGCTCA 409 Query 1254459 ATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCG 1254518 | |||||||||||| | |||||||||| | | | |||| ||||||||| ||| Sbjct 410 AAGATGTCGTTGACAGAAGAGTTCATGATGCCCCTGGCCTTGGAGGAGATGCCTCTGTCA 469 Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||||| |||| || ||| ||| | |||||| Sbjct 470 CAGTGCACCTGCTTCAGCATCTCGTACATGCAGATCGAGTA 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100334150291591