Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14992 113 4e-20 seq56282 91.5 1e-13 >seq14992 Length=4940 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || || || || || || || || || || ||| ||||| | || | Sbjct 4937 AAAACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAGAAC 4878 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| ||||| || || |||||||| || | ||||||| Sbjct 4877 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATCTTC 4818 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || |||||||||||| | | | | |||| || || ||||| || |||||||| Sbjct 4817 GCTGGCAAGCAGCTGGAGGATGGGCGCACCTTGTCCGACTACAACATCCAGAAGGAATCC 4758 Query 24899 ACACTACACTTGGTGTTGCG 24918 || || ||||||||| |||| Sbjct 4757 ACCCTGCACTTGGTGCTGCG 4738 >seq56282 Length=20701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | ||||| || || || ||||| || || || || ||||||||| Sbjct 11910 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGTTGATTG 11969 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || || || |||| |||||||||||||| ||||||||||| || || Sbjct 11970 CTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCCTGTCTC 12019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449431264266440