Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq54549 192 9e-43 seq66465 176 7e-38 seq67507 156 7e-32 seq64843 104 4e-16 seq35656 100 4e-15 seq19596 91.5 2e-12 >seq54549 Length=25704 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct 14596 TGTACTTGGTGACGGCCTTGGTGCCCTCCGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 14537 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 14536 GCAGCAAGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 14477 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||||||||| || ||||||| Sbjct 14476 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 14417 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 14416 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 14357 Query 1485710 AAAC 1485713 | || Sbjct 14356 AGAC 14353 >seq66465 Length=982 Score = 176 bits (194), Expect = 7e-38 Identities = 183/244 (75%), Gaps = 22/244 (9%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 362 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 421 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| | | ||||||||| Sbjct 422 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGGGGCGCGCTTGTT----- 476 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 477 GCGCC-----------------GGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 519 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 520 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 579 Query 1485710 AAAC 1485713 | || Sbjct 580 ACAC 583 >seq67507 Length=5290 Score = 156 bits (172), Expect = 7e-32 Identities = 180/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 812 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 871 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| | | | Sbjct 872 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGATGGGGGGGNNNNNNNNNNNNN 931 Query 1485590 GCGCCA-----GGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 |||| ||||||| | ||||||| |||| ||||||||||| || || Sbjct 932 NNNNNNNNNNGGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGA 991 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| ||| | ||| |||||| ||| |||||||||||||||||| ||||| Sbjct 992 GTTCATGATGCCCATGGCCTTGGAGGAGATACCCGTGTCGGGGTGCACCTGCTTCAGCAC 1051 Query 1485705 CTTGTAAAC 1485713 |||||| || Sbjct 1052 CTTGTACAC 1060 >seq64843 Length=3276 Score = 104 bits (114), Expect = 4e-16 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| ||||||||||| || ||||||||||| ||| | ||| ||||| Sbjct 756 CGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGA 815 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| |||||||||||||||||| ||||||||||| || Sbjct 816 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 855 >seq35656 Length=1118 Score = 100 bits (110), Expect = 4e-15 Identities = 170/242 (70%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||| |||||||| ||||| | |||| |||| || ||| |||||| ||||| ||| Sbjct 259 GTATTTGGTGACAACCTTGTTGCCCTTGCAGACTGCATGCTTGGCCACCTCGCCAGGCAG 318 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCT--CGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | ||| | |||||| |||||||| | | | | ||| ||||| |||| |||| Sbjct 319 TAGCAGCCACACGGCCGTCTGGATGTGTCCCACTAGGTGATGGTGTTAG--TTGT-AGTG 375 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| | || | ||||| || ||||||| || | |||||||||||| | |||||| Sbjct 376 CGC--CGGGGACAAGACCTCGCTGGCGATGCGCTCAAAGATGTCGTTGACAGAAGAGTTC 433 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| | | | ||| ||||||||| ||| |||||||||||| |||| || | Sbjct 434 ATGATGCCCCTGGCCTTGGAGGAGATGCCTCTGTCACAGTGCACCTGCTTCAGCATCTCG 493 Query 1485709 TA 1485710 || Sbjct 494 TA 495 >seq19596 Length=11242 Score = 91.5 bits (100), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1485499 GAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCG 1485558 |||||||||||| ||||||| || || ||| ||| | |||||| ||||||||||| Sbjct 1098 GAGACGGCGTGCTTGGCCAGCTCACCAGGCAGCGCCAGCCACACGGCCGTCTGGATCTCC 1157 Query 1485559 CGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATG 1485618 || | | ||| ||| ||||||||| | |||||||||| ||||||| | ||||| Sbjct 1158 CGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATG 1217 Query 1485619 CGGTCGATCATGT 1485631 || |||| |||| Sbjct 1218 CGCTCGAAGATGT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907425502278197