Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq60848 107 1e-17 seq58862 93.3 3e-13 seq17879 93.3 3e-13 >seq60848 Length=27135 Score = 107 bits (118), Expect = 1e-17 Identities = 359/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || || ||||||||||||||||| | | | || || | ||| || ||||| Sbjct 1960 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1901 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 1900 AAATCCTGCAGCAGTT-TCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 1842 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || || || | |||| | | ||||| ||||| || || Sbjct 1841 GTCATGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCCACGGGATCCAG 1782 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | |||| ||| | | || ||||| || |||||| ||| | ||| | Sbjct 1781 GGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTA--ATGGACGTG 1724 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| ||| || | | || || ||| || Sbjct 1723 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGACGAC 1664 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 282129 || | ||| || ||||| || ||||| || | || | || | | ||| | || | Sbjct 1663 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGACGACGAACTGCTCTCTTGTTCTCA 1604 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 |||| ||| | || | || | |||||| || ||| | | || | || Sbjct 1603 CTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCG 1548 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| ||||| || ||||| | ||| | |||| || | | |||| | || | Sbjct 1547 GTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTTACCTCAAAGAT 1488 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||||||||| | || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1487 GCCATCTTCAATCGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1428 Query 282310 TACATTCATTTC 282321 || ||| |||| Sbjct 1427 AACGTTCCTTTC 1416 >seq58862 Length=22117 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 8262 TGTTGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGCATGGTTAT 8321 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 8322 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 8381 Query 131296 TGATGG 131301 ||||| Sbjct 8382 CGATGG 8387 >seq17879 Length=41821 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 |||| || |||||||||| || || || || ||||| | ||| ||| ||| ||||| | Sbjct 41460 CTAATCCATATGCAAGAGAAGCCGCGGTAGGCTCATTTACTATCCTAACAACCTCTAATC 41519 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | ||||| || | | || ||||| ||||||||||| ||||| ||||| || |||| Sbjct 41520 CGGCAATCTTTCCTGCATTTTTAGTTGATTGTCTCTGTGAATCATTGAAATAGGCAGGTA 41579 Query 86234 CAGTAATAACTGCTTTATTAATAG 86257 | ||||| || ||||| | || || Sbjct 41580 CTGTAATCACAGCTTTTTGAACAG 41603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736559231132598