Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq56282 87.8 2e-12 >seq56282 Length=20701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 151334 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 151392 |||||||| | ||||| ||||||||||| || ||| ||| | || ||||||||| || Sbjct 11916 ACTATTTCTGTACACAGGTTGCTGCATTTGAT-GGTCCCCAAGTTCTGTTGATTGCTCTT 11974 Query 151393 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 || ||||||| ||| ||||| | ||||||||||||||| || || Sbjct 11975 CCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCCTGTCTC 12019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488037605823600