Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq65150 93.3 1e-13 >seq65150 Length=182698 Score = 93.3 bits (102), Expect = 1e-13 Identities = 273/415 (66%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 54147 CAAAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAA 54206 |||| || ||||||||||| || ||||| |||||||| | | ||| |||||| Sbjct 42121 CAAATCTATCAACCAGCTACACCCACTTTTTCTAATGCTGGAAAGAAAAGATCTGGAGAA 42062 Query 54207 ATGGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATC 54266 | || || ||||| | | ||| |||||| | ||||| || || || |||| Sbjct 42061 TTAGTCTCATGTTTTCTGCTGGAATCAGATGATTCTATTAATTCTATAAATTACATTATC 42002 Query 54267 AATACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTT 54326 ||| ||||||||||||| || || || || || || || |||| ||| | || | Sbjct 42001 TCAACTTCAATGCAATTATCCAAGATAGGGGGAGGAGTGGCGATAAA--TTTATCAAGAT 41944 Query 54327 AGAGGAAGAAAAGAGCA--AATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAG 54384 |||| | | ||||| ||||| |||||| | | || || || || | || | Sbjct 41943 TGAGGGGTAGAGGAGCATCTATTAAGAAGATTGATAGTACAGCATCGGGGGTTCTCCCGG 41884 Query 54385 TTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCG 54444 | | || || |||||||| || ||||||| |||| |||| || || ||| | Sbjct 41883 TCTTAAAGATTCTAGAAGATGTATTTGATTATGCTGATCA-ATTGG-GAATGAGGAGGGG 41826 Query 54445 --CTGGAGCTGTTTACTTAAACATCTTCCACTGGGATATTATTGAATTCTTAGATACTAA 54502 ||| | || ||| |||| || || |||| || | | || || | ||| ||| Sbjct 41825 GAGTGGGGTAGTCTACCTAAATATTTTTCACTATGACTTAGTAGATTTTATTGATTGTAA 41766 Query 54503 AAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTAATT 54557 ||| || ||||| |||||||| | ||||||||| | | || || || || ||| Sbjct 41765 AAAAATTAATGCAGATGAAAAGTCTAGAATTCAAACACTCTCAATAGGTTTGATT 41711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1590219073303104