Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14992 125 1e-23 seq18090 123 5e-23 >seq14992 Length=4940 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||||| || |||||||| || ||||| ||||| || || || || | Sbjct 4724 TACCACCCCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 4783 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || || || || ||||| ||||| || || || ||||| || | Sbjct 4784 ACAAGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 4843 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || ||||| || ||| | || || | Sbjct 4844 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 4903 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 | |||| || || ||||||||||||| Sbjct 4904 CCTCCAGGGTGATGGTCTTGCCTGTCA 4930 >seq18090 Length=21919 Score = 123 bits (136), Expect = 5e-23 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 13579 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 13520 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || |||||| Sbjct 13519 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTT 13460 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 13459 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 13417 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 10580 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCC 10521 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 10520 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 10461 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||||| | | ||||| ||| Sbjct 10460 TTCTATTATCGGACATATAAG 10440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980784056770897