Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq42571 105 9e-18 seq11804 93.3 6e-14 >seq42571 Length=9614 Score = 105 bits (116), Expect = 9e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 9280 TACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 9221 Query 8715 TTCCCCGACGAGGAGCAG 8732 |||||||||| |||| || Sbjct 9220 TTCCCCGACGGGGAGAAG 9203 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 9277 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9218 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 9217 CCCGACGGGGAG 9206 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 9206 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9265 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 9266 TACTAACGAGGA 9277 >seq11804 Length=3345 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||| ||||| | || ||||| ||||||||||||||| || Sbjct 3239 TATTCCTCGTTAGTATAGTGGTGAGTATCCACGCCTGTCATGCGGGAGACCGGGGTTTGA 3298 Query 8715 TTCCCCGACGAGGA 8728 |||||||||| ||| Sbjct 3299 TTCCCCGACGGGGA 3312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| | || ||||| ||||||||||||||| ||||| Sbjct 3242 TCCTCGTTAGTATAGTGGTGAGTATCCACGCCTGTCATGCGGGAGACCGGGGTTTGATTC 3301 Query 11789 CCCGACGAGGA 11799 ||||||| ||| Sbjct 3302 CCCGACGGGGA 3312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652168101883120