Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq65181 138 1e-27 seq44744 132 6e-26 >seq65181 Length=16427 Score = 138 bits (152), Expect = 1e-27 Identities = 400/607 (66%), Gaps = 13/607 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| |||| | || | |||| Sbjct 14355 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACGTGTATGAAAGAGTCTGCTGGAATGTAA 14414 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 14415 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 14474 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 || ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 14475 TTATAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 14534 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | |||| | || ||||| | | | Sbjct 14535 TTGCAAGTGGAGATAGTTG--GAATCAAGTTTTTATCGTTGACGTAGTCTCCAAAGGCTT 14592 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 14593 GTCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGTG 14651 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 14652 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 14707 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||||| ||| | | | | | || | | | | ||||| ||||| |||||||| || Sbjct 14708 TTCGAATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTGA 14767 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGC 177420 || || | || || | || ||||| || |||| ||| || || | ||| || | Sbjct 14768 ATCACGCCGATATGTCAGGGTCAGATTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG- 14826 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || || |||||||||||||| |||||||| || || | ||| |||| || | Sbjct 14827 TATGAGTCGGAGACTCTAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 14886 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || || ||||| |||| || || |||| || | Sbjct 14887 GAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATC 14946 Query 177541 TGTAATA 177547 ||| ||| Sbjct 14947 TGTTATA 14953 >seq44744 Length=20694 Score = 132 bits (146), Expect = 6e-26 Identities = 565/884 (64%), Gaps = 23/884 (3%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 |||||||| || || || | ||| || ||| | | ||||| || || || || Sbjct 10938 TCGAACTTATTAGCAAAGAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCTCCTACC 10882 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || ||||| || || ||||| ||||| || | || || | | Sbjct 10881 CCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCATGGCGGGTAGGGTGCACCTTTG 10822 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 10821 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 10762 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 ||||||||||| || | || || || || || | || | |||||| | || Sbjct 10761 ACGTCGTACTTGTTGCTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTT 10702 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 |||||||||| || || || || || || || || | |||||| ||||||| | | Sbjct 10701 GCCCACAGGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAGT 10645 Query 162421 GTTTTATCGTATAG-AAT--GTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 |||| || | ||| ||| || | || | || | ||| || || ||| Sbjct 10644 ATTTTGCTGTTTTCTAATACGTATTCTACAAATCTTCTACTAACTACAAAATAGGCACTA 10585 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 |||||||||| || | | | ||| || | | ||||||| || ||||| || Sbjct 10584 CCAGAAAACATCGGAGTACTGAGAGGTGGTAGTTGTTTGTCTACGCCTGTGTTCTTTATT 10525 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG--- 162594 | || || | | | || ||| ||||||| | ||| || || || Sbjct 10524 TTACCATCAATAATTTCATGGTGCTTTTTCCACCTTACTTCTTTA----TAAACAGGCAT 10469 Query 162595 -TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||| || || | ||||| ||| | ||| || | | | || ||| | Sbjct 10468 TTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTATTATTTCTTG 10409 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 |||||||| | |||||||| |||| ||||| || || | |||||||| || || Sbjct 10408 GTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACT 10349 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || Sbjct 10348 TCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATA 10289 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| | Sbjct 10288 TACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 10229 Query 162834 CACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| || || | || | || || ||| |||| || || | ||| || | ||| Sbjct 10228 CACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TATCAACATGAATGCAATAAAAATT 10172 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 ||||||||| ||||| | || | | ||| || | |||||| || || || | ||||| Sbjct 10171 CTGAGGGGCATAGATTGATCTTAAAAGTCTATCAAGCATCTCAATTTTGTGATAAACCAC 10112 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || ||||||| Sbjct 10111 TATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 10068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577832433540800