Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq33878 118 3e-23 seq74254 95.1 4e-16 >seq33878 Length=33157 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 12235 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 12294 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 12295 CCCGGGCTTCAGC 12307 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 || ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| Sbjct 24774 GGATGAAGTAGCTCAGCTGGGAGAGCGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCAAT 24715 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 24714 CCCGGGCTTCAGC 24702 >seq74254 Length=214 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||| |||| |||||||||||||||| ||||||| |||||| || Sbjct 15 GCTGAAGTAGCTCAGCTGGCAGAGTGTTAGACTGAAGATCTAGAGGTCCCAGGTTCATCC 74 Query 2829 CCGGGCTTCAGC 2840 ||| |||||||| Sbjct 75 CCGAGCTTCAGC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15835224883335