Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq54549 152 7e-31 seq66465 141 1e-27 seq67507 120 4e-21 seq19596 107 3e-17 seq35656 89.7 7e-12 >seq54549 Length=25704 Score = 152 bits (168), Expect = 7e-31 Identities = 173/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 14354 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 14407 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||||| || ||| | Sbjct 14408 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 14467 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||| ||||| ||||||| Sbjct 14468 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACAGCCGTGC 14527 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || ||||||| |||||||||||| |||||||||| Sbjct 14528 GCTTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCGGAGGGCACCA 14578 >seq66465 Length=982 Score = 141 bits (156), Expect = 1e-27 Identities = 167/229 (73%), Gaps = 28/229 (12%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 580 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 527 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | Sbjct 526 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCC--------------- 482 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| ||||||||| | | ||| | |||| ||||||||||| |||||||| Sbjct 481 --GGCGC-----AACAAGCGCGCCCCCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 429 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 428 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 380 >seq67507 Length=5290 Score = 120 bits (132), Expect = 4e-21 Identities = 164/234 (70%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || | | ||| ||| |||| ||||| Sbjct 1057 TACAAGGTGCTGAAGCAGGTGCACCCCGACACGGGT-----ATC-TCCTCCAAGGCCATG 1004 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 1003 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 944 Query 725034 C-----TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | | | | ||| | |||| ||||||||||| |||| Sbjct 943 CCNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCATCCCCTCGCGGGAGATCCAGACGGCCG 884 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 883 TGCGGCTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 830 >seq19596 Length=11242 Score = 107 bits (118), Expect = 3e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 724999 ACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACA 725058 |||| |||| ||||||| | ||||||| |||||||||| || |||||||||| || Sbjct 1230 ACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGCCTGGCGCACTACAACAAGCGCTCCA 1171 Query 725059 CGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCA 725118 | ||| | |||| ||||||||||| |||||| | ||| ||| || || ||||||| Sbjct 1170 CCATCACCTCGCGGGAGATCCAGACGGCCGTGTGGCTGGCGCTGCCTGGTGAGCTGGCCA 1111 Query 725119 GGCACGCCGTCTCCGAG 725135 ||||||||||||| || Sbjct 1110 AGCACGCCGTCTCCAAG 1094 >seq35656 Length=1118 Score = 89.7 bits (98), Expect = 7e-12 Identities = 171/247 (69%), Gaps = 15/247 (6%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || || ||| || |||| |||||||||||| | | | |||| Sbjct 510 TACTCGATCTGCATGTACGAGATGCTGAAGCAGGTGCACTGTGACA-----GAGGCATC- 457 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||| | ||||||||||| | |||||||||||| | || ||||||| | Sbjct 456 TCCTCCAAGGCCAGGGGCATCATGAACTCTTCTGTCAACGACATCTTTGAGCGCATCGCC 397 Query 725019 ACCGAGG-CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCG--AG 725075 | ||||| | ||| || ||||| || |||| ||||| ||| | | | | | Sbjct 396 AGCGAGGTCTTGTC-CCCGGCGCACTACAAC-----TAACACCATCACCTAGTGGGACAC 343 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| |||||| | ||| | ||| ||||| |||||| ||| || |||| | || Sbjct 342 ATCCAGACGGCCGTGTGGCTGCTACTGCCTGGCGAGGTGGCCAAGCATGCAGTCTGCAAG 283 Query 725136 GGCACCA 725142 |||| || Sbjct 282 GGCAACA 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169813124237526