Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq132 86.0 8e-12 seq56282 82.4 1e-10 >seq132 Length=15727 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| ||| || ||||| || |||| ||||| Sbjct 4347 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 4406 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 4407 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 4465 Query 122797 GCAA 122800 |||| Sbjct 4466 GCAA 4469 >seq56282 Length=20701 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | ||||||||||| | |||| | || || ||||| Sbjct 11894 CTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 11953 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||| |||| ||| || |||||| ||||| | || ||||| |||||||| || || || Sbjct 11954 CAAGTTCTGTTGATTGCTCTTCCGATTGCAAGAGTCTTTGTAAAGCATGTACGGTGTGCC 12013 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 12014 TGTCTCTGTCTGAGA 12028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627381021280800