Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq60848 178 4e-39 seq4343 136 1e-26 seq21534 95.1 4e-14 >seq60848 Length=27135 Score = 178 bits (196), Expect = 4e-39 Identities = 367/539 (68%), Gaps = 8/539 (1%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| ||||| | || ||||| || |||||||| ||| | || || ||||||| | Sbjct 1426 TTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACGATTGAAGATG 1485 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || || | ||||||||||| ||||| | Sbjct 1486 GCATCTTTGAGGTAAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACA 1545 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | || | || || || || ||||| ||||| ||||| || | || || | Sbjct 1546 ACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGT 1604 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | ||||| || | ||||| || || ||||| |||||| | | Sbjct 1605 GAGAACAAGAGAGCAGTTCGTCGTCTCCGCACTGCATGCGAGCGTGCAAAGCGTACTCTG 1664 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || |||| || || || ||| |||||||||||||| ||| || | || |||| Sbjct 1665 TCGTCTAGCACGCAGGCCAGTATCGAAATTGATTCTCTCTATGAGGGTATTGACTTCTAC 1724 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 | || ||||| | ||||| |||||||| || ||| || || || | | || Sbjct 1725 ACGTCCATTACCAGAGCTCGCTTTGAAGA--GCTGAATGCTGACCTGTTCCGTGGCACCC 1782 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 ||||||| |||||||| | | ||||| || | |||| ||||| |||| Sbjct 1783 TGGATCCCGTGGAAAAGGCCCTGCGGGATGCCAAGCTCGACAAATCGCAGATCCATGACA 1842 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | |||||||| ||||| ||||| ||||| | || | | || || || | Sbjct 1843 TCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTGCAGGATTTCT 1902 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || |||||||| | | ||| | || ||||| ||||||||||| || || ||||| Sbjct 1903 TCAACGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGCTTACGGTGC 1960 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| |||| || | ||||||||||||||||| ||||| | |||||| || Sbjct 1152 ACTGTTACTAATGCGGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCT 1211 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || ||||||||||| | |||||| ||| | || || || |||| || ||||| || || Sbjct 1212 ACGAAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACA 1271 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 1272 GCTGCTGCGATAGCCTATGGCCTGGACAAAA 1302 Score = 102 bits (112), Expect = 2e-16 Identities = 215/321 (67%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 183470 CTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATC 183529 |||||| || | ||||| || | || | | ||||||||||| | ||| | ||||| Sbjct 1754 CTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAGAAGTCAATACCCTCATAGAGAGAATC 1695 Query 183530 AATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGT 183589 |||||| || | || || || || | || | || || || || ||||| || Sbjct 1694 AATTTCGATACTGGCCTGCGTGCTAGACGACAGAGTACGCTTTGCACGCTCGCATGCAGT 1635 Query 183590 TCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAA 183649 | || ||||| | || ||| || || | || |||| || || || | || || Sbjct 1634 GCGGAGACGACGAACTGCTCTCTTGTTCTCACTGATGTCTTTCTTGTGCTTGCGCTTGAA 1575 Query 183650 TTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATC 183709 ||||| ||| || || | | | | | ||||| ||||| ||||| || || || || Sbjct 1574 TTCAGCAATGAAGTGGTTGACCATGCGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTC 1515 Query 183710 GCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAA 183769 || ||||| | ||| || ||||| || || |||||||| | | |||||| |||||||| Sbjct 1514 ACCTGCAGTGGATTTTACCTCAAAGATGCCATCTTCAATCGTCAGAATTGACACATCAAA 1455 Query 183770 TGTACCACCACCCAAATCAAA 183790 || ||||| || | ||||| Sbjct 1454 GGTGCCACCTCCAAGGTCAAA 1434 >seq4343 Length=2668 Score = 136 bits (150), Expect = 1e-26 Identities = 257/377 (68%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| |||||||| || ||| | || | ||| ||||||| || || Sbjct 2198 AAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCATCACA 2139 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| ||||||| || || ||||||||||||| ||| | Sbjct 2138 GTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCACT 2079 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| | | || || || || ||||| || || || || || |||||| | Sbjct 2078 GGCCTTAATGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCTATAGCCTATGGGTTG 2019 Query 349742 GATAAAATGAGTGACC------AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 ||||| | || || ||| || || | || || ||||| | || || || Sbjct 2018 GATAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGAGGGGGC 1959 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || | || || |||| || || || ||||| || || | || ||| Sbjct 1958 ACTTTCGATGTGTCTATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCTACAGCT 1899 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || || ||||| || || ||||| || || | || |||||||| || Sbjct 1898 GGTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAA 1839 Query 349916 GAATTTAAGCGTCAAGC 349932 ||||| |||||| |||| Sbjct 1838 GAATTCAAGCGT-AAGC 1823 >seq21534 Length=5954 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| || || | || || ||| || || || || || || Sbjct 5199 ACGGCTGCTGCCATTGCTTACGGATTGGACAA---GAGGGAGGGCGAGAAGAACATCCTC 5143 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || || |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 5142 GTGTTCGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACAATTGACAATGGAGTC 5083 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| |||||| |||||| || || || ||||||||||| ||||| Sbjct 5082 TTTGAAGTTGTGGCAACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 5030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513644516542169