Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq29096 123 2e-23 seq29300 102 7e-17 seq39813 96.9 3e-15 >seq29096 Length=6299 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 1978 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 1919 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 || ||||| ||||| || || |||||||| ||||| ||||| || || || || | Sbjct 1918 TACTCCGAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGATAGTTCACCATTTAG 1859 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||||||||| | ||||| ||| Sbjct 1858 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGA 1813 >seq29300 Length=3227 Score = 102 bits (112), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || |||||||| || ||||| ||| Sbjct 1492 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCTCTGGTGCT-GAA 1550 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 1551 ACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 1610 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 1611 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 1650 >seq39813 Length=6178 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 4545 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGGCGATTCTTCTCAGGA 4604 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | | ||||| |||||| Sbjct 4605 ATGGAGAACCAGGTTTTTTTACCCATTATCAGCGCATTCTGTTTACCT 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405752721696778