Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq54308 107 3e-18 seq132 107 3e-18 seq56282 93.3 6e-14 >seq54308 Length=15023 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | |||||||||||| |||||||||||||||| ||| | || || Sbjct 12088 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 12147 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || || || ||||||||||| || ||||| || || || || || Sbjct 12148 AGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 12207 Query 46774 AC 46775 || Sbjct 12208 AC 12209 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| || |||||||| || || || |||||| Sbjct 10851 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCT 10910 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || |||||||| || ||||| ||||| Sbjct 10911 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10945 >seq132 Length=15727 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 4349 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCTTC 4408 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 4409 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 4468 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 4469 ACCACTCTCTCACC 4482 >seq56282 Length=20701 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| ||||| || || || | |||||| || || | || | || | || ||||| Sbjct 9543 TCCTTTGCTGACAGGAGAACCCTCATATGTCTCATACGGTCCTTGCTCCTTGGCCAGTTC 9602 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT 76052 || || || || || |||||||||||||| || || ||||| | || || ||| | | Sbjct 9603 ACAGCTGGCTTCCAAAGCACCGTAATAAATGGTCTCAAAAATGTGCTGGTTCAAGCGC-T 9661 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 | || ||| |||| ||||| || || | | || || || |||||||| || ||||| | Sbjct 9662 GGGCCTCAGGACTTTCAAAGGGGTACCGCATCAGGATGAAAGCATCTGCCAGACCCTGCA 9721 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 | ||||| ||||| || | ||| | | | ||||| |||||| Sbjct 9722 CACCAATGCCAATGGGACGATGGCGCCTGTTGGAGCGTTCAGC 9764 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 5079 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 5138 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || ||||| |||||||||||||| || || ||||| || | | ||| | Sbjct 5139 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCCGCTGCCATCTTGAGGACGGTTT 5198 Query 75564 TTTGAGGAATTTCCCA 75579 | || | || ||||| Sbjct 5199 TCTGGGAGATCTCCCA 5214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712195416759360