Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8109 176 6e-39 seq50065 127 3e-24 >seq8109 Length=28461 Score = 176 bits (194), Expect = 6e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||||||| || ||||||| ||||| ||| ||| ||||||||||| |||||||| Sbjct 25182 ATGAGTCGAGTAGTTTGGAACAACTGCTCATCATCCCACTCTGGATGTTCCTGTTTCAGG 25241 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 25242 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCTGGG 25301 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| ||||||| ||||||| | ||| || ||| || | | ||||| Sbjct 25302 ACCAAACCAAACACCTCTTGCCCGACAGAAAACTGCAGGTGTTCAGGTATGTGAGGAGGG 25361 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 25362 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 25421 Query 9484 TG 9485 || Sbjct 25422 TG 25423 Score = 136 bits (150), Expect = 6e-27 Identities = 182/252 (72%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||| | |||| || | || ||||| | ||| || |||||||| |||||||||||| | Sbjct 23231 GCGGTATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCT 23290 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 ||||||||||| | || |||| || || || || |||||||| || || | ||| | Sbjct 23291 GGGGAGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACC 23350 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 || | ||||| ||||| || || || |||||||| || | || || | |||||| Sbjct 23351 ATTGTTTCACCAAAGATAGCACCTGGCCGTGGCTTTTCTACAAGGAGGCCTGGATACAGC 23410 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 |||| ||| || | |||||| ||||| | ||||| || || || || ||||||||| Sbjct 23411 TCCATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 23470 Query 8585 GT-TTTATTAAT 8595 || ||||| || Sbjct 23471 GTAATTATTGAT 23482 >seq50065 Length=17739 Score = 127 bits (140), Expect = 3e-24 Identities = 180/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 15045 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 15104 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 15105 TCCCGTTTCAGTATGTCGCAGACACGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 15164 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 15165 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 15224 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | | || |||| |||||| ||| | | || ||||| ||||||||||| || Sbjct 15225 ACGGCAGATGGGTAGACCATGTGGACCGGAGCATCAGTGACCATGGGGGGATACACCTCT 15284 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 15285 CCATCCACCACCT 15297 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||||||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 12592 CTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 12651 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || |||||||||||||| || | ||| | ||||| || || ||||| | || || Sbjct 12652 CCTTCAGGGAGAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAGATACCATTAGGTT 12711 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||||| || | || || || || | ||||| ||| || | |||||| || || Sbjct 12712 GAGGCTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 12769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716133730313920